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    galnt6.3 polypeptide N-acetylgalactosaminyltransferase 6, gene 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100498043, updated on 15-Oct-2023

    Summary

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    Official Symbol
    galnt6.3provided by Xenbase
    Official Full Name
    polypeptide N-acetylgalactosaminyltransferase 6, gene 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-22063205
    See related
    Ensembl:ENSXETG00000037416
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    galnt6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (142553070..142586018, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (139289794..139322231, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 6 Neighboring gene uncharacterized LOC105946561 Neighboring gene uncharacterized LOC105946562 Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6), gene 2 Neighboring gene TRAF family member associated NFKB activator like [provisional]

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 6
    Names
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      142553070..142586018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004911903.4 → XP_004911960.1  polypeptide N-acetylgalactosaminyltransferase 6

      See identical proteins and their annotated locations for XP_004911960.1

      UniProtKB/TrEMBL
      A0A5S6NFA7, A0A803KAX7, F6Q089
      Related
      ENSXETP00000117492.1, ENSXETT00000107340.1
      Conserved Domains (2) summary
      cd02510
      Location:178 → 483
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:496 → 619
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_004911905.4 → XP_004911962.1  polypeptide N-acetylgalactosaminyltransferase 6

      See identical proteins and their annotated locations for XP_004911962.1

      UniProtKB/TrEMBL
      A0A5S6NFA7, A0A803KAX7, F6Q089
      Conserved Domains (2) summary
      cd02510
      Location:178 → 483
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:496 → 619
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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