U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    sh3rf2 SH3 domain containing ring finger 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100497897, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    sh3rf2provided by Xenbase
    Official Full Name
    SH3 domain containing ring finger 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5763588
    See related
    Ensembl:ENSXETG00000002319
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hepp1; rnf158
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (39622394..39693431)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (30239290..30306176)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene PRELI domain containing 2 Neighboring gene glutaredoxin, cysteine rich 2 Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene RNA binding motif protein 27

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase SH3RF2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      39622394..39693431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031898815.1 → XP_031754675.1  E3 ubiquitin-protein ligase SH3RF2 isoform X1

      UniProtKB/TrEMBL
      F7CI92
      Related
      ENSXETP00000004953.5, ENSXETT00000004953.5
      Conserved Domains (3) summary
      cd11784
      Location:381 → 435
      SH3_SH3RF2_3; Third Src Homology 3 domain of SH3 domain containing ring finger 2
      cl17036
      Location:188 → 243
      SH3; Src Homology 3 domain superfamily
      cl17238
      Location:17 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_002935265.4 → XP_002935311.2  E3 ubiquitin-protein ligase SH3RF2 isoform X2

      UniProtKB/TrEMBL
      A0A8J0QMP1
      Conserved Domains (3) summary
      cd11784
      Location:381 → 435
      SH3_SH3RF2_3; Third Src Homology 3 domain of SH3 domain containing ring finger 2
      cl17036
      Location:188 → 243
      SH3; Src Homology 3 domain superfamily
      cl17238
      Location:17 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.