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    pcyt1a phosphate cytidylyltransferase 1A, choline [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496938, updated on 8-Mar-2024

    Summary

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    Official Symbol
    pcyt1aprovided by Xenbase
    Official Full Name
    phosphate cytidylyltransferase 1A, cholineprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1001244
    See related
    Ensembl:ENSXETG00000003079
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cct; cta; ccta; ctpct; pcyt1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (102880642..102896038, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (109911301..109922233, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene transferrin receptor Neighboring gene solute carrier family 51 member A Neighboring gene dynein light chain Tctex-type 2B Neighboring gene programmed cell death 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables choline-phosphate cytidylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within CDP-choline pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphatidylcholine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    choline-phosphate cytidylyltransferase A
    Names
    phosphate cytidylyltransferase 1, choline, alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      102880642..102896038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031902291.1 → XP_031758151.1  choline-phosphate cytidylyltransferase A isoform X2

      UniProtKB/TrEMBL
      A0A6I8QXM7, A0A8J1JNG7
      Related
      ENSXETP00000073881.2, ENSXETT00000101481.2
      Conserved Domains (1) summary
      PLN02413
      Location:52 → 309
      PLN02413; choline-phosphate cytidylyltransferase

    2. XM_002934045.5 → XP_002934091.3  choline-phosphate cytidylyltransferase A isoform X1

      UniProtKB/TrEMBL
      A0A6I8QXM7, F7DAV8
      Related
      ENSXETP00000006692.4, ENSXETT00000006692.4
      Conserved Domains (1) summary
      cd02174
      Location:108 → 257
      CCT; CTP:phosphocholine cytidylyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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