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    pum2 pumilio RNA binding family member 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496617, updated on 8-Mar-2024

    Summary

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    Official Symbol
    pum2provided by Xenbase
    Official Full Name
    pumilio RNA binding family member 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-977105
    See related
    Ensembl:ENSXETG00000008903
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    pumh2; puml2; pumilio2; pumilio-2
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (143249548..143294402, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (139045519..139091136, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene lysosomal-associated protein transmembrane 4 alpha Neighboring gene syndecan 1 Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 Neighboring gene ras homolog family member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pumilio homolog 2
    Names
    pumilo 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      143249548..143294402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012970914.3 → XP_012826368.1  pumilio homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A6I8Q9U5, A0A8J0SYH0
      Related
      ENSXETP00000066180.2, ENSXETT00000070680.2
      Conserved Domains (2) summary
      cd07920
      Location:726 → 1047
      Pumilio; Pumilio-family RNA binding domain
      pfam13634
      Location:531 → 626
      Nucleoporin_FG; Nucleoporin FG repeat region

    2. XM_031902968.1 → XP_031758828.1  pumilio homolog 2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8Q9U5, A0A6I8QLJ7
      Related
      ENSXETP00000073860.2, ENSXETT00000086715.2
      Conserved Domains (1) summary
      cd07920
      Location:759 → 1080
      Pumilio; Pumilio-family RNA binding domain

    3. XM_002934483.5 → XP_002934529.2  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q9U5, A0A6I8QBR2
      Related
      ENSXETP00000067010.2, ENSXETT00000103921.2
      Conserved Domains (1) summary
      cd07920
      Location:838 → 1159
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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