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    rbfox3 RNA binding fox-1 homolog 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496414, updated on 8-Mar-2024

    Summary

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    Official Symbol
    rbfox3provided by Xenbase
    Official Full Name
    RNA binding fox-1 homolog 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-976381
    See related
    Ensembl:ENSXETG00000020236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    fox3; neun; fox-3; hrnbp3
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (22468199..23032757, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (11971601..12066187, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene calcium activated nucleotidase 1 Neighboring gene endo-beta-N-acetylglucosaminidase Neighboring gene uncharacterized LOC116408075 Neighboring gene alpha glucosidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA binding protein fox-1 homolog 3
    Names
    RNA binding protein, fox-1 homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      22468199..23032757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012952840.3 → XP_012808294.1  RNA binding protein fox-1 homolog 3 isoform X3

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A6I8R2N9
      Related
      ENSXETP00000078878.1, ENSXETT00000084496.2
      Conserved Domains (4) summary
      COG0724
      Location:134 → 276
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12407
      Location:143 → 218
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam04813
      Location:40 → 114
      HNF-1A_C; Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
      pfam12414
      Location:252 → 340
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    2. XM_031894300.1 → XP_031750160.1  RNA binding protein fox-1 homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J1IX21
      Conserved Domains (3) summary
      TIGR01661
      Location:6 → 169
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:207 → 295
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:98 → 173
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    3. XM_031894299.1 → XP_031750159.1  RNA binding protein fox-1 homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J1IX21
      Related
      ENSXETP00000070363.2, ENSXETT00000092367.2
      Conserved Domains (3) summary
      TIGR01661
      Location:6 → 169
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:207 → 295
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:98 → 173
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    4. XM_031894298.1 → XP_031750158.1  RNA binding protein fox-1 homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J1IX21
      Conserved Domains (3) summary
      TIGR01661
      Location:6 → 169
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:207 → 295
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:98 → 173
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    5. XM_031894297.1 → XP_031750157.1  RNA binding protein fox-1 homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J1IX21
      Related
      ENSXETP00000113500.1, ENSXETT00000115838.1
      Conserved Domains (3) summary
      TIGR01661
      Location:6 → 169
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:207 → 295
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:98 → 173
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    6. XM_012952839.3 → XP_012808293.1  RNA binding protein fox-1 homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J1IX21
      Conserved Domains (3) summary
      TIGR01661
      Location:6 → 169
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:207 → 295
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:98 → 173
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    7. XM_004918569.4 → XP_004918626.1  RNA binding protein fox-1 homolog 3 isoform X4

      UniProtKB/TrEMBL
      A0A803JML3, A0A8J0R7R2
      Conserved Domains (4) summary
      COG0724
      Location:134 → 177
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam04813
      Location:40 → 114
      HNF-1A_C; Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
      pfam12414
      Location:221 → 309
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:143 → 182
      RRM_SF; RNA recognition motif (RRM) superfamily

    8. XM_002932517.5 → XP_002932563.2  RNA binding protein fox-1 homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A803JZJ5, A0A8J0QLY1
      Conserved Domains (3) summary
      cd12407
      Location:143 → 218
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      TIGR01661
      Location:51 → 214
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:252 → 340
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    9. XM_012952838.3 → XP_012808292.1  RNA binding protein fox-1 homolog 3 isoform X2

      UniProtKB/TrEMBL
      A0A6I8QL80, A0A8J0SBX4
      Conserved Domains (4) summary
      COG0724
      Location:134 → 276
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12407
      Location:143 → 218
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam04813
      Location:40 → 114
      HNF-1A_C; Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
      pfam12414
      Location:252 → 340
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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