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    ajm1 apical junction component 1 homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100495930, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ajm1provided by Xenbase
    Official Full Name
    apical junction component 1 homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6046053
    See related
    Ensembl:ENSXETG00000046443
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ajm-1; c9orf172
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (2695496..2707260, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683647.1 (2026..6483)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene MAM domain containing 4 Neighboring gene phosphohistidine phosphatase 1 Neighboring gene RAB, member RAS oncogene family like 6 Neighboring gene transmembrane protein 141

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    apical junction component 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      2695496..2707260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031892016.1 → XP_031747876.1  apical junction component 1 homolog

      UniProtKB/TrEMBL
      A0A1B8Y029
      Related
      ENSXETP00000102117.1, ENSXETT00000105357.1
      Conserved Domains (2) summary
      PHA03247
      Location:67 → 514
      PHA03247; large tegument protein UL36; Provisional
      pfam01753
      Location:782 → 824
      zf-MYND; MYND finger

    2. XM_031892015.1 → XP_031747875.1  apical junction component 1 homolog

      UniProtKB/TrEMBL
      A0A1B8Y029
      Related
      ENSXETP00000114496.1, ENSXETT00000108904.1
      Conserved Domains (2) summary
      PHA03247
      Location:67 → 514
      PHA03247; large tegument protein UL36; Provisional
      pfam01753
      Location:782 → 824
      zf-MYND; MYND finger
    Nucleotide Protein Strain
    Heading Accession and Version

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