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    sp6 Sp6 transcription factor [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494184, updated on 8-Mar-2024

    Summary

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    Official Symbol
    sp6provided by Xenbase
    Official Full Name
    Sp6 transcription factorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-877211
    See related
    Ensembl:ENSXETG00000048156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    xsp6
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (11516782..11528375, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (4541495..4545277, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L10 Neighboring gene leucine rich repeat containing 46 Neighboring gene secernin 2 Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene Sp2 transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor Sp6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      11516782..11528375 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018089350.2 → XP_017944839.2  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A803JPG4
      Related
      ENSXETP00000109893.1, ENSXETT00000119841.1
      Conserved Domains (4) summary
      sd00017
      Location:234 → 253
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:289 → 311
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:275 → 298
      zf-H2C2_2; Zinc-finger double domain
      cl41771
      Location:1 → 230
      SP6-9_N; N-terminal domains of transcription factor Specificity Proteins (SP) 6-9, and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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