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    gtf3c5 general transcription factor IIIC subunit 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100492614, updated on 8-Mar-2024

    Summary

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    Official Symbol
    gtf3c5provided by Xenbase
    Official Full Name
    general transcription factor IIIC subunit 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1012275
    See related
    Ensembl:ENSXETG00000006264
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (11342664..11353984, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (7179305..7190211)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene bile salt-activated lipase Neighboring gene carboxyl ester lipase, gene 2 Neighboring gene growth factor independent 1B transcription repressor Neighboring gene TSC complex subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription factor TFIIIC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    general transcription factor 3C polypeptide 5
    Names
    general transcription factor IIIC, polypeptide 5, 63kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      11342664..11353984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012968929.3 → XP_012824383.1  general transcription factor 3C polypeptide 5 isoform X2

      UniProtKB/TrEMBL
      A0A8J0SVF7
      Conserved Domains (1) summary
      pfam09734
      Location:22 → 322
      Tau95; RNA polymerase III transcription factor (TF)IIIC subunit

    2. XM_002936193.5 → XP_002936239.2  general transcription factor 3C polypeptide 5 isoform X1

      UniProtKB/TrEMBL
      A0A6I8R5P5, A0A6I8RZA6
      Related
      ENSXETP00000077260.2, ENSXETT00000092466.2
      Conserved Domains (2) summary
      pfam09734
      Location:168 → 322
      Tau95; RNA polymerase III transcription factor (TF)IIIC subunit
      pfam17682
      Location:25 → 132
      Tau95_N; Tau95 Triple barrel domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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