U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    atm ATM serine/threonine kinase [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100490767, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    atmprovided by Xenbase
    Official Full Name
    ATM serine/threonine kinaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-493810
    See related
    Ensembl:ENSXETG00000014471
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    at1; atdc; tel1; xatm; telo1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    63
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (159833774..159895329, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (156752064..156819426, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene exophilin 5 Neighboring gene protein O-glucosyltransferase 3 Neighboring gene chromosome 2 C11orf65 homolog Neighboring gene nuclear protein, ataxia-telangiectasia locus Neighboring gene acetyl-CoA acetyltransferase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine-protein kinase ATM
    Names
    ataxia telangiectasia mutated

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      159833774..159895329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934928.5 → XP_002934974.3  serine-protein kinase ATM isoform X1

      UniProtKB/TrEMBL
      A0A6I8QJJ0
      Related
      ENSXETP00000068714.2, ENSXETT00000093819.2
      Conserved Domains (4) summary
      COG5032
      Location:2463 → 3059
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05171
      Location:2691 → 2970
      PIKKc_ATM; Catalytic domain of Ataxia Telangiectasia Mutated
      pfam02259
      Location:2103 → 2497
      FAT; FAT domain
      pfam11640
      Location:8 → 165
      TAN; Telomere-length maintenance and DNA damage repair

    2. XM_031897311.1 → XP_031753171.1  serine-protein kinase ATM isoform X2

      UniProtKB/TrEMBL
      A0A8J1J931
      Conserved Domains (2) summary
      pfam02259
      Location:2103 → 2497
      FAT; FAT domain
      pfam11640
      Location:8 → 165
      TAN; Telomere-length maintenance and DNA damage repair
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.