wdsub1 WD repeat, sterile alpha motif and U-box domain containing 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: wdsub1provided by Xenbase
Official Full Name: WD repeat, sterile alpha motif and U-box domain containing 1provided by Xenbase
Primary source: Xenbase:XB-GENE-964629
See related: Ensembl:ENSXETG00000007589
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: ubox6; wdsam1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (73319936..73337044)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (68258204..68275274)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: WD repeat, SAM and U-box domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

73319936..73337044

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002933267.5 → XP_002933313.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X1

UniProtKB/TrEMBL

F6QSC2

Related

ENSXETP00000016520.3, ENSXETT00000016520.5

Conserved Domains (5) summary

cd00200
Location:5 → 307

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:16 → 52

7WD40; WD40 repeat [structural motif]

cd16655
Location:408 → 443

RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger [structural motif]

cl15755
Location:327 → 397

SAM_superfamily; SAM (Sterile alpha motif )

cl17238
Location:402 → 473

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
XM_031893299.1 → XP_031749159.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8J1IU81

Conserved Domains (4) summary

sd00039
Location:23 → 59

7WD40; WD40 repeat [structural motif]

cl15755
Location:208 → 278

SAM_superfamily; SAM (Sterile alpha motif )

cl17238
Location:283 → 354

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

cl29593
Location:21 → 187

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...