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    ergic1 endoplasmic reticulum-golgi intermediate compartment 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100485859, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ergic1provided by Xenbase
    Official Full Name
    endoplasmic reticulum-golgi intermediate compartment 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-947913
    See related
    Ensembl:ENSXETG00000018301
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ergic32
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (42030612..42104734)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (32707087..32756327, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene dual specificity phosphatase 1 Neighboring gene toll-like receptor 22 Neighboring gene sideroflexin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum-Golgi intermediate compartment membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    endoplasmic reticulum-Golgi intermediate compartment protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      42030612..42104734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031898819.1 → XP_031754679.1  endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q6T9, A0A803K683
      Related
      ENSXETP00000115877.1, ENSXETT00000117936.1
      Conserved Domains (2) summary
      pfam07970
      Location:123 → 280
      COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
      pfam13850
      Location:14 → 107
      ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

    2. XM_031898820.1 → XP_031754680.1  endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8Q6T9, A0A803JLA1
      Related
      ENSXETP00000108730.1, ENSXETT00000116686.1
      Conserved Domains (2) summary
      pfam07970
      Location:114 → 271
      COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
      pfam13850
      Location:5 → 98
      ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
    Nucleotide Protein Strain
    Heading Accession and Version

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