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    hmbox1b homeobox containing 1 b [ Danio rerio (zebrafish) ]

    Gene ID: 100317353, updated on 27-Mar-2024

    Summary

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    Official Symbol
    hmbox1bprovided by ZNC
    Official Full Name
    homeobox containing 1 bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090908-4
    See related
    Ensembl:ENSDARG00000109287 AllianceGenome:ZFIN:ZDB-GENE-090908-4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human HMBOX1 (homeobox containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (49778255..49806195)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (49975301..50002979)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7A2b Neighboring gene filamin A interacting protein 1b Neighboring gene kinesin family member 13Bb Neighboring gene integrator complex subunit 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    homeobox-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      49778255..49806195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009301469.3 → XP_009299744.1  homeobox-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3B2H2
      Related
      ENSDARP00000154081.1, ENSDART00000191671.1
      Conserved Domains (2) summary
      cd00086
      Location:275 → 347
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:13 → 233
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    2. XM_005173819.4 → XP_005173876.1  homeobox-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BL53
      Conserved Domains (2) summary
      cd00086
      Location:275 → 347
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:13 → 233
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    3. XM_009301470.3 → XP_009299745.1  homeobox-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8M3AZL5
      Conserved Domains (2) summary
      cd00086
      Location:275 → 347
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:13 → 233
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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