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    bud13 BUD13 homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145651, updated on 8-Mar-2024

    Summary

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    Official Symbol
    bud13provided by Xenbase
    Official Full Name
    BUD13 homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6258647
    See related
    Ensembl:ENSXETG00000003767
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    fsap71
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (82327238..82340852)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (83875998..83889630, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene apolipoprotein A5 Neighboring gene ZPR1 zinc finger Neighboring gene stabilizer of axonemal microtubules 1 Neighboring gene uncharacterized LOC116412035

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of RES complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BUD13 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      82327238..82340852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012967232.2 → XP_012822686.2  BUD13 homolog

      UniProtKB/TrEMBL
      A0A803K5L7, A0A8J0SUL2
      Related
      ENSXETP00000115652.1, ENSXETT00000107039.1
      Conserved Domains (3) summary
      PHA03307
      Location:157 → 441
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam09736
      Location:699 → 840
      Bud13; Pre-mRNA-splicing factor of RES complex
      NF033845
      Location:306 → 634
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein Strain
    Heading Accession and Version

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