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    fam83h family with sequence similarity 83 member H [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135103, updated on 8-Mar-2024

    Summary

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    Official Symbol
    fam83hprovided by Xenbase
    Official Full Name
    family with sequence similarity 83 member Hprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5797458
    See related
    Ensembl:ENSXETG00000005283
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (153146578..153192205, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016686257.1 (443..5095)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene cytochrome P450 2C31-like Neighboring gene forkhead activin signal transducer 3-like Neighboring gene scribbled planar cell polarity protein Neighboring gene poly(U) binding splicing factor 60KDa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within intermediate filament cytoskeleton organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    colocalizes_with keratin filament ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM83H
    Names
    Protein FAM83H

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      153146578..153192205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031903482.1 → XP_031759342.1  protein FAM83H isoform X1

      UniProtKB/Swiss-Prot
      A9JRM0
      UniProtKB/TrEMBL
      A0A8J1JRZ0, F6QK10
      Related
      ENSXETP00000011553.5, ENSXETT00000011553.5
      Conserved Domains (1) summary
      cd09188
      Location:17 → 284
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H

    2. XM_031903485.1 → XP_031759345.1  protein FAM83H isoform X1

      UniProtKB/Swiss-Prot
      A9JRM0
      UniProtKB/TrEMBL
      A0A8J1JRZ0, F6QK10
      Related
      ENSXETP00000119143.1, ENSXETT00000122339.1
      Conserved Domains (1) summary
      cd09188
      Location:17 → 284
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H

    3. XM_031903486.1 → XP_031759346.1  protein FAM83H isoform X1

      UniProtKB/Swiss-Prot
      A9JRM0
      UniProtKB/TrEMBL
      A0A8J1JRZ0, F6QK10
      Conserved Domains (1) summary
      cd09188
      Location:17 → 284
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H

    4. XM_031903483.1 → XP_031759343.1  protein FAM83H isoform X2

      UniProtKB/TrEMBL
      A0A8J1JN89, F6QK10
      Conserved Domains (1) summary
      cd09188
      Location:32 → 299
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H

    5. XM_031903484.1 → XP_031759344.1  protein FAM83H isoform X1

      UniProtKB/Swiss-Prot
      A9JRM0
      UniProtKB/TrEMBL
      A0A8J1JRZ0, F6QK10
      Conserved Domains (1) summary
      cd09188
      Location:17 → 284
      PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A9JRM0.2 GenPept UniProtKB/Swiss-Prot:A9JRM0

    Gene LinkOut

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