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    hcfc2 host cell factor C2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127587, updated on 8-Mar-2024

    Summary

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    Official Symbol
    hcfc2provided by Xenbase
    Official Full Name
    host cell factor C2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-991080
    See related
    Ensembl:ENSXETG00000019643
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hcf2; hcf-2
    Orthologs
    human mouse all
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    Genomic context

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    See hcfc2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (49855197..49877990)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (40329866..40352791)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene deoxyguanosine kinase Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene thioredoxin reductase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    host cell factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      49855197..49877990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004912902.4 → XP_004912959.2  host cell factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A8J0R2R1, F6WXM5
      Conserved Domains (3) summary
      PLN02193
      Location:67 → 383
      PLN02193; nitrile-specifier protein
      cd00063
      Location:658 → 689
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:248 → 299
      Kelch; KELCH repeat [structural motif]

    2. XM_002938079.5 → XP_002938125.3  host cell factor 2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RLL6, F6WXM5
      Related
      ENSXETP00000081623.2, ENSXETT00000077383.2
      Conserved Domains (3) summary
      PLN02193
      Location:67 → 383
      PLN02193; nitrile-specifier protein
      cd00063
      Location:657 → 688
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:248 → 299
      Kelch; KELCH repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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