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    hes6.1 hairy and enhancer of split 6, gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100126814, updated on 25-Jan-2024

    Summary

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    Official Symbol
    hes6.1provided by Xenbase
    Official Full Name
    hairy and enhancer of split 6, gene 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1018104
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    XHes6; Xhes-6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (128039351..128043165, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (124422716..124426530, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptor 35 Neighboring gene calcium binding protein 39 Neighboring gene hes family bHLH transcription factor 6 Neighboring gene period circadian regulator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription cofactor HES-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      128039351..128043165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002933347.3 → XP_002933393.1  transcription cofactor HES-6 isoform X2

      UniProtKB/TrEMBL
      A0A8J0QN55
      Conserved Domains (2) summary
      pfam07527
      Location:76 → 114
      Hairy_orange; Hairy Orange
      cl00081
      Location:5 → 61
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    2. XM_018094465.2 → XP_017949954.1  transcription cofactor HES-6 isoform X1

      UniProtKB/TrEMBL
      A0A8J0SUA0

    3. XM_004917808.3 → XP_004917865.2  transcription cofactor HES-6 isoform X3

      UniProtKB/TrEMBL
      A0A8J0R753
      Conserved Domains (2) summary
      pfam07527
      Location:76 → 114
      Hairy_orange; Hairy Orange
      cd11460
      Location:4 → 61
      bHLH-O_HES6; basic helix-loop-helix-orange (bHLH-O) domain found in transcription factor HES-6 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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