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    ppp2r5b protein phosphatase 2 regulatory subunit B', beta [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100101792, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ppp2r5bprovided by Xenbase
    Official Full Name
    protein phosphatase 2 regulatory subunit B', betaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-490177
    See related
    Ensembl:ENSXETG00000001650
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (32687651..32729099, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (38289320..38331979, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene membrane anchored junction protein Neighboring gene glycoprotein hormone alpha 2 Neighboring gene solute carrier family 22 member 6-like Neighboring gene solute carrier family 22 member 6-A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100279.1 → NP_001093749.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

      See identical proteins and their annotated locations for NP_001093749.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135984
      UniProtKB/TrEMBL
      A0A6I8RE97, A0A6I8SLH2, A4IIE4, F7BK65
      Related
      ENSXETP00000079204.2, ENSXETT00000085491.2
      Conserved Domains (1) summary
      pfam01603
      Location:67 → 465
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      32687651..32729099 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960410.2 → XP_012815864.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1

      See identical proteins and their annotated locations for XP_012815864.1

      UniProtKB/TrEMBL
      A0A6I8RE97, A0A6I8SLH2, A4IIE4, F7BK65
      Related
      ENSXETP00000098399.2, ENSXETT00000091866.2
      Conserved Domains (1) summary
      pfam01603
      Location:67 → 465
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)

    2. XM_012960409.2 → XP_012815863.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1

      See identical proteins and their annotated locations for XP_012815863.1

      UniProtKB/TrEMBL
      A0A6I8RE97, A0A6I8SLH2, A4IIE4, F7BK65
      Related
      ENSXETP00000003474.4, ENSXETT00000003474.5
      Conserved Domains (1) summary
      pfam01603
      Location:67 → 465
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    Nucleotide Protein Strain
    Heading Accession and Version

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