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    olfm1 olfactomedin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100101729, updated on 8-Mar-2024

    Summary

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    Official Symbol
    olfm1provided by Xenbase
    Official Full Name
    olfactomedin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-491791
    See related
    Ensembl:ENSXETG00000022336
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    amy; noe1; olfa; noelin1; noelin-1
    Orthologs
    human mouse all
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    Genomic context

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    See olfm1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (7336104..7405285, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683374.1 (1269190..1301889)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene piercer of microtubule wall 1 Neighboring gene protein phosphatase 1 regulatory subunit 26 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene collagen, type V, alpha 1 Neighboring gene retinoid X receptor alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within atrioventricular valve formation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cardiac epithelial to mesenchymal transition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within negative regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within positive regulation of epithelial to mesenchymal transition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within positive regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    noelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100244.1 → NP_001093714.1  noelin

      See identical proteins and their annotated locations for NP_001093714.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135743
      UniProtKB/TrEMBL
      A0A1B8YAC8, A4IHX8
      Related
      ENSXETP00000109727.1, ENSXETT00000115067.1
      Conserved Domains (3) summary
      smart00284
      Location:228 → 478
      OLF; Olfactomedin-like domains
      PRK03918
      Location:92 → 217
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:54 → 152
      Noelin-1; Neurogenesis glycoprotein

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      7336104..7405285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031906823.1 → XP_031762683.1  noelin isoform X1

      UniProtKB/TrEMBL
      A0A1B8YAC8, A0A803J677
      Related
      ENSXETP00000103321.1, ENSXETT00000115656.1
      Conserved Domains (3) summary
      smart00284
      Location:200 → 450
      OLF; Olfactomedin-like domains
      PRK03918
      Location:64 → 189
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:28 → 124
      Noelin-1; Neurogenesis glycoprotein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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