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    nrip1 nuclear receptor interacting protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100037834, updated on 8-Mar-2024

    Summary

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    Official Symbol
    nrip1provided by Xenbase
    Official Full Name
    nuclear receptor interacting protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-968871
    See related
    Ensembl:ENSXETG00000023130
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See nrip1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (26791724..26845080, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (22599502..22654007, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 13 Neighboring gene uncharacterized LOC116408764 Neighboring gene SAM domain, SH3 domain and nuclear localization signals 1 Neighboring gene ubiquitin specific peptidase 25 Neighboring gene uncharacterized LOC116408765 Neighboring gene microRNA mir-99

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear receptor-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097283.1 → NP_001090752.1  nuclear receptor-interacting protein 1

      See identical proteins and their annotated locations for NP_001090752.1

      Status: PROVISIONAL

      Source sequence(s)
      BC131832
      UniProtKB/TrEMBL
      A2RRS6, F7A804
      Related
      ENSXETP00000117573.1, ENSXETT00000107537.1
      Conserved Domains (4) summary
      pfam15687
      Location:27 → 326
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:407 → 734
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:750 → 827
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:836 → 1138
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      26791724..26845080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956228.3 → XP_012811682.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_012811682.1

      UniProtKB/TrEMBL
      A2RRS6, F7A804
      Related
      ENSXETP00000104765.1, ENSXETT00000112961.1
      Conserved Domains (4) summary
      pfam15687
      Location:27 → 326
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:407 → 734
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:750 → 827
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:836 → 1138
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    Nucleotide Protein Strain
    Heading Accession and Version

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