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    VDBG_02216 TATA-binding protein-associated phosphoprotein [ Verticillium alfalfae VaMs.102 ]

    Gene ID: 9533879, updated on 21-Dec-2023

    Summary

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    Gene symbol
    VDBG_02216
    Gene description
    TATA-binding protein-associated phosphoprotein
    Locus tag
    VDBG_02216
    Gene type
    protein coding
    RNA name
    TATA-binding protein-associated phosphoprotein
    RefSeq status
    PROVISIONAL
    Organism
    Verticillium alfalfae VaMs.102 (strain: VaMs.102)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_003315037.1Genomic Context describing neighboring genes Neighboring gene FAD dependent oxidoreductase superfamily Neighboring gene short-chain dehydrogenase Neighboring gene pre-mRNA-splicing factor 38A Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003315037.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables core promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of negative cofactor 2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    TATA-binding protein-associated phosphoprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003315037.1 Reference assembly

      Range
      2439145..2439917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003007982.1 → XP_003008028.1  TATA-binding protein-associated phosphoprotein [Verticillium alfalfae VaMs.102]

      See identical proteins and their annotated locations for XP_003008028.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C9S9P4
      Conserved Domains (1) summary
      cl23735
      Location:9 → 136
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version

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