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    znf609a zinc finger protein 609a [ Danio rerio (zebrafish) ]

    Gene ID: 793767, updated on 27-Mar-2024

    Summary

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    Official Symbol
    znf609aprovided by ZNC
    Official Full Name
    zinc finger protein 609aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6219
    See related
    Ensembl:ENSDARG00000103388 AllianceGenome:ZFIN:ZDB-GENE-030131-6219
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi39d03; wu:fi39d03; zgc:162740
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF609 (zinc finger protein 609). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 25
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (817028..997967, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (734900..915800, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene GRAM domain-containing protein 2-like Neighboring gene uncharacterized LOC101886811 Neighboring gene si:ch211-284k5.2 Neighboring gene neuronal acetylcholine receptor subunit alpha-7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A genome-wide map of circular RNAs in adult zebrafish. Sharma D, et al. Sci Rep, 2019 Mar 5. PMID 30837568, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 609; zinc finger protein 609a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098393.1 → NP_001091863.1  zinc finger protein 609a

      See identical proteins and their annotated locations for NP_001091863.1

      Status: PROVISIONAL

      Source sequence(s)
      BC141793
      UniProtKB/TrEMBL
      A5D8S4
      Related
      ENSDARP00000130810.1, ENSDART00000164082.2
      Conserved Domains (2) summary
      pfam12316
      Location:1234 → 1372
      Dsh_C; Segment polarity protein dishevelled (Dsh) C terminal
      pfam13945
      Location:372 → 462
      NST1; Salt tolerance down-regulator

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      817028..997967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005174213.4 → XP_005174270.1  zinc finger protein 609 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BLJ2, F1QRV8
      Conserved Domains (1) summary
      pfam13945
      Location:372 → 462
      NST1; Salt tolerance down-regulator

    2. XM_005174214.4 → XP_005174271.1  zinc finger protein 609 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BLG5
      Conserved Domains (1) summary
      pfam13945
      Location:143 → 233
      NST1; Salt tolerance down-regulator
    Nucleotide Protein Strain
    Heading Accession and Version

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