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    iftap intraflagellar transport associated protein [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779527, updated on 5-Mar-2024

    Summary

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    Official Symbol
    iftapprovided by Xenbase
    Official Full Name
    intraflagellar transport associated proteinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-973490
    See related
    Ensembl:ENSXETG00000032018
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c11orf74
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (10659406..10673434, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (3851322..3865377, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene ALX homeobox 4 Neighboring gene exostosin glycosyltransferase 2 Neighboring gene recombination activating gene 2 Neighboring gene recombination activating gene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    intraflagellar transport-associated protein; protein C11orf74 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001197154.1 → NP_001184083.1  intraflagellar transport-associated protein

      See identical proteins and their annotated locations for NP_001184083.1

      Status: VALIDATED

      Source sequence(s)
      AL879003, BC154868
      UniProtKB/TrEMBL
      A0A6I8PXB0, A8WGV6
      Related
      ENSXETP00000060543.2, ENSXETT00000061097.3
      Conserved Domains (1) summary
      pfam17722
      Location:1 → 194
      DUF5567; Family of unknown function (DUF5567)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      10659406..10673434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012961283.3 → XP_012816737.1  protein C11orf74 homolog isoform X1

      See identical proteins and their annotated locations for XP_012816737.1

      UniProtKB/TrEMBL
      A0A6I8PXB0, A8WGV6
      Conserved Domains (1) summary
      pfam17722
      Location:1 → 194
      DUF5567; Family of unknown function (DUF5567)

    2. XM_012961284.3 → XP_012816738.1  protein C11orf74 homolog isoform X2

      See identical proteins and their annotated locations for XP_012816738.1

      UniProtKB/TrEMBL
      A8WGV6, Q0VFC8
      Conserved Domains (1) summary
      pfam17722
      Location:1 → 190
      DUF5567; Family of unknown function (DUF5567)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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