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    SYCE2 synaptonemal complex central element protein 2 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 747076, updated on 29-Mar-2024

    Summary

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    Official Symbol
    SYCE2provided by VGNC
    Official Full Name
    synaptonemal complex central element protein 2provided by VGNC
    Primary source
    VGNC:VGNC:2236
    Locus tag
    CK820_G0026361
    See related
    Ensembl:ENSPTRG00000010549
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (15593497..15614219, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (15593540..15614933, complement)

    Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 1 Neighboring gene small ribosomal subunit protein eS6-like Neighboring gene glutaryl-CoA dehydrogenase Neighboring gene phenylalanyl-tRNA synthetase subunit alpha Neighboring gene calreticulin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in synaptonemal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in central element IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptonemal complex central element protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      15593497..15614219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016935206.3 → XP_016790695.1  synaptonemal complex central element protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A2J8LV61, A0A6D2WVW2, H2QFH6
      Conserved Domains (2) summary
      TIGR04527
      Location:59 → 174
      mycoplas_twoTM; two transmembrane protein
      pfam16566
      Location:96 → 148
      CREPT; Cell-cycle alteration and expression-elevated protein in tumour

    2. XM_001155819.7 → XP_001155819.3  synaptonemal complex central element protein 2 isoform X1

      See identical proteins and their annotated locations for XP_001155819.3

      UniProtKB/TrEMBL
      A0A2J8LV61, A0A6D2WVW2, H2QFH6
      Related
      ENSPTRP00000018008.4
      Conserved Domains (2) summary
      pfam07307
      Location:48 → 116
      HEPPP_synt_1; Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
      pfam16566
      Location:96 → 148
      CREPT; Cell-cycle alteration and expression-elevated protein in tumour
    Nucleotide Protein
    Heading Accession and Version

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