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    TRIM10 tripartite motif containing 10 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 742346, updated on 3-Apr-2024

    Summary

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    Official Symbol
    TRIM10provided by VGNC
    Official Full Name
    tripartite motif containing 10provided by VGNC
    Primary source
    VGNC:VGNC:12727
    Locus tag
    CK820_G0006734
    See related
    Ensembl:ENSPTRG00000017919
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    3.8-1.2
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (36064162..36084031, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (36064169..36084033, complement)

    Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 31 Neighboring gene uncharacterized LOC134810285 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene tripartite motif containing 40 Neighboring gene tripartite motif containing 15 Neighboring gene polyadenylate-binding protein-interacting protein 1-like Neighboring gene tripartite motif containing 26 Neighboring gene uncharacterized LOC134810187

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. Anzai T, et al. Proc Natl Acad Sci U S A, 2003 Jun 24. PMID 12799463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 10
    Names
    B30-RING finger protein
    RING finger protein 9
    vacuolar ATPase G synthetase subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001071819.1 → NP_001065287.1  tripartite motif-containing protein 10

      See identical proteins and their annotated locations for NP_001065287.1

      Status: PROVISIONAL

      Source sequence(s)
      AB210201
      UniProtKB/Swiss-Prot
      Q1XHU7, Q1XHU9, Q7YR32
      UniProtKB/TrEMBL
      A0A2J8NX32
      Conserved Domains (4) summary
      smart00336
      Location:94 → 135
      BBOX; B-Box-type zinc finger
      cd15827
      Location:309 → 480
      SPRY_PRY_TRIM10; PRY/SPRY domain of tripartite motif-binding protein 10 (TRIM10) also known as hematopoietic RING finger 1 (HERF1)
      cl17238
      Location:16 → 60
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cl23765
      Location:143 → 241
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      36064162..36084031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009450868.5 → XP_009449143.4  tripartite motif-containing protein 10 isoform X2

    2. XM_054685545.2 → XP_054541520.1  tripartite motif-containing protein 10 isoform X1

      UniProtKB/Swiss-Prot
      Q1XHU7, Q1XHU9, Q7YR32
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YR32.1 GenPept UniProtKB/Swiss-Prot:Q7YR32

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