sp5.L Sp5 transcription factor L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sp5.L
Official Full Name: Sp5 transcription factor L homeolog
Primary source: Xenbase:XB-GENE-6254266
Locus tag: XELAEV_18044677mg
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sp6; spr1; xsp5; xsp6; xspr-1
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (75610256..75613281)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (65105349..65108379)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Results show that fibroblast growth factor 16 (FGF16) can activate the MAPK pathway and expression of Sp5 transcription factor S (sp5) and Sp5 transcription factor L (sp5l).
Title: Xenopus laevis FGF16 activates the expression of genes coding for the transcription factors Sp5 and Sp5l.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Sp5 transcription factor L homeolog

Names: Sp6 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096636.1 → NP_001090105.1 Sp5 transcription factor L homeolog

See identical proteins and their annotated locations for NP_001090105.1

Status: PROVISIONAL

Source sequence(s)

BC106417

UniProtKB/TrEMBL

A0A974BUA2, A0A974BZ72, Q3KQ24

Conserved Domains (3) summary

sd00017
Location:278 → 297

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:333 → 355

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:319 → 342

zf-H2C2_2; Zinc-finger double domain