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    trmo.L tRNA methyltransferase O L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 734345, updated on 11-Apr-2024

    Summary

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    Official Symbol
    trmo.L
    Official Full Name
    tRNA methyltransferase O L homeolog
    Primary source
    Xenbase:XB-GENE-6251460
    Locus tag
    XELAEV_18006498mg
    See related
    EnsemblRapid:ENSXLAG00005024906
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    trmo; c9orf156
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: 1L
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (117222528..117233039, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (105101012..105111523, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108713376 Neighboring gene forkhead box E1 L homeolog Neighboring gene hemogen-like Neighboring gene acidic nuclear phosphoprotein 32 family member B L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC85179

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables tRNA (L-threonylcarbamoyladenosine(37)-C2) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC734345

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095828.1 → NP_001089297.1  uncharacterized protein LOC734345

      See identical proteins and their annotated locations for NP_001089297.1

      Status: PREDICTED

      Source sequence(s)
      BC090247
      UniProtKB/TrEMBL
      A0A974DZB3, Q5EAT7
      Related
      ENSXLAP00005073811.1, ENSXLAT00005075376.1
      Conserved Domains (1) summary
      COG1720
      Location:26 → 165
      TsaA; tRNA (Thr-GGU) A37 N-methylase [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      117222528..117233039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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