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    pcid2.S PCI domain containing 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 734284, updated on 11-Apr-2024

    Summary

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    Official Symbol
    pcid2.S
    Official Full Name
    PCI domain containing 2 S homeolog
    Primary source
    Xenbase:XB-GENE-964462
    Locus tag
    XELAEV_18015587mg
    See related
    EnsemblRapid:ENSXLAG00005028118
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pcid2
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See pcid2.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (106760194..106780794)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (97655527..97676239)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene growth hormone regulated TBC protein 1 S homeolog Neighboring gene lysosomal-associated membrane protein 1 S homeolog Neighboring gene cullin 4A S homeolog Neighboring gene uncharacterized LOC121400656 Neighboring gene coagulation factor X-like Neighboring gene coagulation factor IX-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC84981

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription export complex 2 IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PCI domain-containing protein 2
    Names
    CSN12-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095768.1 → NP_001089237.1  PCI domain-containing protein 2

      See identical proteins and their annotated locations for NP_001089237.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089256
      UniProtKB/Swiss-Prot
      Q5FWP8
      UniProtKB/TrEMBL
      A0A974DK51
      Related
      ENSXLAP00005084052.1, ENSXLAT00005085699.1
      Conserved Domains (1) summary
      cl02111
      Location:70 → 393
      PCI; PCI domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      106760194..106780794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5FWP8.1 GenPept UniProtKB/Swiss-Prot:Q5FWP8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.