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    CDS1 CDP-diacylglycerol synthase 1 [ Sus scrofa (pig) ]

    Gene ID: 733582, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CDS1provided by VGNC
    Official Full Name
    CDP-diacylglycerol synthase 1provided by VGNC
    Primary source
    VGNC:VGNC:86523
    See related
    Ensembl:ENSSSCG00000009231
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in lung (RPKM 10.5), kidney (RPKM 6.2) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CDS1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (133959250..134041258, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (143439806..143520073, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene acyl carrier protein, mitochondrial pseudogene Neighboring gene WD repeat and FYVE domain containing 3 Neighboring gene uncharacterized LOC106507809 Neighboring gene uncharacterized LOC110262193 Neighboring gene NK6 homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization and physical mapping of the porcine CDS1 and CDS2 genes. Mercadé A, et al. Anim Biotechnol, 2007. PMID 17364441
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidate cytidylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidate cytidylyltransferase 1
    NP_001037999.1
    XP_020956176.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044534.1 → NP_001037999.1  phosphatidate cytidylyltransferase 1

      See identical proteins and their annotated locations for NP_001037999.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ105588
      UniProtKB/TrEMBL
      A0A286ZWR5, A0A4X1TQV4, A0A8D2AFR1, Q30GF1
      Related
      ENSSSCP00000035894.1, ENSSSCT00000051786.2
      Conserved Domains (1) summary
      cl21502
      Location:123 → 457
      CTP_transf_1; Cytidylyltransferase family

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      133959250..134041258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021100517.1 → XP_020956176.1  phosphatidate cytidylyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      A0A5G2QL26, A0A8D1IR15, A0A8D2ABD7
      Related
      ENSSSCP00000064715.1, ENSSSCT00000081254.2
      Conserved Domains (1) summary
      cl21502
      Location:123 → 400
      CTP_transf_1; Cytidylyltransferase family
    Nucleotide Protein
    Heading Accession and Version

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