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    foxp4.S forkhead box P4 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 733240, updated on 11-Apr-2024

    Summary

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    Official Symbol
    foxp4.S
    Official Full Name
    forkhead box P4 S homeolog
    Primary source
    Xenbase:XB-GENE-982697
    Locus tag
    XELAEV_18014898mg
    See related
    EnsemblRapid:ENSXLAG00005001945
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    FKHLA; foxp4a; foxp4b
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    Genomic context

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    See foxp4.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (60355901..60395130, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (56308275..56347601, complement)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene transcription factor EB S homeolog Neighboring gene myoD family inhibitor Neighboring gene uncharacterized LOC121400541 Neighboring gene triggering receptor expressed on myeloid cells 2 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The FoxP subclass in Xenopus laevis development. Schön C, et al. Dev Genes Evol, 2006 Oct. PMID 16609867
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein P4
    Names
    forkhead box transcription factor
    foxp4
    xlFoxP4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095615.1 → NP_001089084.1  forkhead box protein P4

      See identical proteins and their annotated locations for NP_001089084.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124940
      UniProtKB/Swiss-Prot
      Q08AZ6, Q4VYR7, Q4VYR8
      UniProtKB/TrEMBL
      A0A974DJN5
      Related
      ENSXLAP00005005869.1, ENSXLAT00005005975.1
      Conserved Domains (2) summary
      pfam00250
      Location:436 → 514
      Forkhead; Forkhead domain
      pfam16159
      Location:274 → 341
      FOXP-CC; FOXP coiled-coil domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      60355901..60395130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018248443.2 → XP_018103932.1  forkhead box protein P4 isoform X2

      UniProtKB/Swiss-Prot
      Q08AZ6, Q4VYR7, Q4VYR8
      UniProtKB/TrEMBL
      A0A8J0UAK1

    2. XM_018248440.2 → XP_018103929.1  forkhead box protein P4 isoform X1

      UniProtKB/Swiss-Prot
      Q08AZ6, Q4VYR7, Q4VYR8
      UniProtKB/TrEMBL
      A0A974DJN5

    3. XM_018248442.1 → XP_018103931.1  forkhead box protein P4 isoform X1

      UniProtKB/Swiss-Prot
      Q08AZ6, Q4VYR7, Q4VYR8
      UniProtKB/TrEMBL
      A0A974DJN5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4VYR7.1 GenPept UniProtKB/Swiss-Prot:Q4VYR7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases