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    Bmp8b bone morphogenetic protein 8b [ Rattus norvegicus (Norway rat) ]

    Gene ID: 679119, updated on 29-Feb-2024

    Summary

    Official Symbol
    Bmp8bprovided by RGD
    Official Full Name
    bone morphogenetic protein 8bprovided by RGD
    Primary source
    RGD:1591873
    See related
    Ensembl:ENSRNOG00000033209 AllianceGenome:RGD:1591873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be active in extracellular space. Orthologous to human BMP8A (bone morphogenetic protein 8a) and BMP8B (bone morphogenetic protein 8b). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 5.6), Lung (RPKM 4.3) and 9 other tissues See more
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    Genomic context

    Location:
    5q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (140671117..140696450)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (135386058..135411337)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (140803387..140821104)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene MYCL proto-oncogene, bHLH transcription factor Neighboring gene tRNA isopentenyltransferase 1 Neighboring gene 3-oxoacid CoA transferase 2B Neighboring gene uncharacterized LOC134486987 Neighboring gene peptidylprolyl isomerase E Neighboring gene uncharacterized LOC120102973 Neighboring gene hippocalcin-like 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cytokine activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in diet induced thermogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in embryonic morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in germ cell development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    bone morphogenetic protein 8B; uncharacterized protein Bmp8b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      140671117..140696450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288622.1XP_063144692.1  bone morphogenetic protein 8B isoform X1

    2. XM_039111230.2XP_038967158.1  bone morphogenetic protein 8B isoform X3

      UniProtKB/TrEMBL
      A6IS16
      Conserved Domains (2) summary
      cl40434
      Location:295350
      TGF_beta_SF; transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily
      pfam00688
      Location:32248
      TGFb_propeptide; TGF-beta propeptide
    3. XM_002729526.7XP_002729572.1  bone morphogenetic protein 8B isoform X2

      See identical proteins and their annotated locations for XP_002729572.1

      UniProtKB/TrEMBL
      A6IS17, D3ZWC5
      Related
      ENSRNOP00000049595.2
      Conserved Domains (2) summary
      pfam00019
      Location:298398
      TGF_beta; Transforming growth factor beta like domain
      pfam00688
      Location:32248
      TGFb_propeptide; TGF-beta propeptide
    4. XM_039111231.2XP_038967159.2  uncharacterized protein Bmp8b isoform X4