U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    syt14b synaptotagmin XIVb [ Danio rerio (zebrafish) ]

    Gene ID: 561547, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    syt14bprovided by ZNC
    Official Full Name
    synaptotagmin XIVbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041014-36
    See related
    Ensembl:ENSDARG00000001891 AllianceGenome:ZFIN:ZDB-GENE-041014-36
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-59d15.2
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9241782..9277813, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9254071..9290047, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene fos-like antigen 2 like Neighboring gene potassium channel, subfamily K, member 5b Neighboring gene 5'-nucleotidase, cytosolic IB b Neighboring gene si:dkey-174m14.3 Neighboring gene coiled-coil domain-containing protein 106-like Neighboring gene retinol dehydrogenase 14b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A manual collection of Syt, Esyt, Rph3a, Rph3al, Doc2, and Dblc2 genes from 46 metazoan genomes--an open access resource for neuroscience and evolutionary biology. Craxton M. BMC Genomics, 2010 Jan 15. PMID 20078875, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    synaptotagmin XIVb; synaptotagmin-14b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326322.1 → NP_001313251.1  synaptotagmin-14b

      Status: VALIDATED

      Source sequence(s)
      BX942841
      UniProtKB/TrEMBL
      A0A286Y918, A0A8M1P365
      Related
      ENSDARP00000143662.2, ENSDART00000175069.2
      Conserved Domains (2) summary
      cd08389
      Location:210 → 333
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:363 → 520
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      9241782..9277813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468458.1 → XP_021324133.1  synaptotagmin XIVb isoform X1

      UniProtKB/TrEMBL
      A0A8M9PBT7
      Conserved Domains (3) summary
      cd08389
      Location:426 → 549
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:579 → 717
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
      cl27511
      Location:59 → 324
      Na_Ca_ex; Sodium/calcium exchanger protein

    2. XM_009294574.3 → XP_009292849.1  synaptotagmin XIVb isoform X2

      UniProtKB/TrEMBL
      A0A8M3AT24
      Related
      ENSDARP00000116245.2, ENSDART00000136079.3
      Conserved Domains (2) summary
      cd08389
      Location:224 → 347
      C2A_Synaptotagmin-14_16; C2A domain first repeat present in Synaptotagmins 14 and 16
      cd08408
      Location:377 → 534
      C2B_Synaptotagmin-14_16; C2 domain second repeat present in Synaptotagmins 14 and 16
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools