U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    fbxo22 F-box protein 22 [ Danio rerio (zebrafish) ]

    Gene ID: 556909, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    fbxo22provided by ZNC
    Official Full Name
    F-box protein 22provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040724-68
    See related
    Ensembl:ENSDARG00000053505 AllianceGenome:ZFIN:ZDB-GENE-040724-68
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:busm1-132m23.3
    Summary
    Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and regulation of skeletal muscle fiber development. Orthologous to human FBXO22 (F-box protein 22). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (29962493..29968874)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (29691428..29697724)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene talin 2a Neighboring gene alpha-tropomyosin Neighboring gene ISL LIM homeobox 2b Neighboring gene proline-serine-threonine phosphatase interacting protein 1b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein polyubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of skeletal muscle fiber development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box only protein 22

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030106.1 → NP_001025277.1  F-box only protein 22

      See identical proteins and their annotated locations for NP_001025277.1

      Status: PROVISIONAL

      Source sequence(s)
      AL845510
      UniProtKB/TrEMBL
      A0A8M1N7D1, Q5SPK4
      Related
      ENSDARP00000070020.3, ENSDART00000075538.6
      Conserved Domains (2) summary
      pfam00646
      Location:25 → 64
      F-box; F-box domain
      pfam10442
      Location:290 → 352
      FIST_C; FIST C domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      29962493..29968874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477546.1 → XP_021333221.1  F-box only protein 22 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QC10
      Conserved Domains (1) summary
      pfam00646
      Location:25 → 64
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous