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    OTP orthopedia homeobox [ Gallus gallus (chicken) ]

    Gene ID: 554220, updated on 3-Apr-2024

    Summary

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    Symbol
    OTPprovided by CGNC
    Full Name
    orthopedia homeoboxprovided by CGNC
    Primary source
    CGNC:54343
    See related
    Ensembl:ENSGALG00010011364
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OTP in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (23679141..23685369)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (23679141..23685369)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 3 beta 1 subunit Neighboring gene tubulin folding cofactor A Neighboring gene WD repeat domain 41 Neighboring gene phosphodiesterase 8B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regionalization of the anterior hypothalamus in the chick embryo. Caqueret A, et al. Dev Dyn, 2005 Jun. PMID 15844192

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein orthopedia

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23679141..23685369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003642956.6 → XP_003643004.1  homeobox protein orthopedia isoform X2

      UniProtKB/TrEMBL
      Q68PG0, R4GH47
      Related
      ENSGALP00010015469.1, ENSGALT00010027172.1
      Conserved Domains (2) summary
      pfam00046
      Location:107 → 156
      Homeobox; Homeobox domain
      pfam03826
      Location:302 → 320
      OAR; OAR domain

    2. XM_040655997.2 → XP_040511931.1  homeobox protein orthopedia isoform X1

      UniProtKB/TrEMBL
      Q68PG0
      Conserved Domains (1) summary
      smart00389
      Location:118 → 167
      HOX; Homeodomain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      23679141..23685369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046935632.1 → XP_046791588.1  homeobox protein orthopedia isoform X2

      UniProtKB/TrEMBL
      R4GH47

    2. XM_046935631.1 → XP_046791587.1  homeobox protein orthopedia isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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