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    LOC552036 suppressor of cytokine signaling 5 [ Apis mellifera (honey bee) ]

    Gene ID: 552036, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC552036
    Gene description
    suppressor of cytokine signaling 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    Socs-5; GB55283
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    Genomic context

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    Location:
    chromosome: LG1
    Exon count:
    7
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG1 NC_037638.1 (14359631..14371051)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG1 NC_007070.3 (15541070..15552109, complement)

    Linkage Group LG1 - NC_037638.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 14 Neighboring gene pyroglutamyl-peptidase 1 Neighboring gene uncharacterized LOC113218798 Neighboring gene bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] Neighboring gene serine/threonine-protein kinase MARK2 Neighboring gene uncharacterized LOC113218805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-3-kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of phosphatidylinositol 3-kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC552036

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037638.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      14359631..14371051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006570603.3 → XP_006570666.1  uncharacterized protein LOC552036 isoform X2

      UniProtKB/TrEMBL
      A0A7M7H646, A0A8B6Z8G5
      Conserved Domains (1) summary
      cd09923
      Location:359 → 431
      SH2_SOCS_family; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

    2. XM_624416.6 → XP_624419.3  uncharacterized protein LOC552036 isoform X1

      UniProtKB/TrEMBL
      A0A7M7RAD8, A0A8B9B294
      Conserved Domains (2) summary
      cl02533
      Location:459 → 510
      SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
      cl15255
      Location:349 → 449
      SH2; Src homology 2 (SH2) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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