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    rad1 RAD1 checkpoint DNA exonuclease [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548799, updated on 5-Mar-2024

    Summary

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    Official Symbol
    rad1provided by Xenbase
    Official Full Name
    RAD1 checkpoint DNA exonucleaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-979329
    See related
    Ensembl:ENSXETG00000000705
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    xrad1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (199176003..199183765)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (185965150..185970595)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene prolactin receptor Neighboring gene alanine--glyoxylate aminotransferase 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C21 Neighboring gene BRX1, biogenesis of ribosomes Neighboring gene tetratricopeptide repeat domain 23-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cell cycle checkpoint protein RAD1
    Names
    RAD1 homolog
    NP_001016045.1
    XP_031755545.1
    XP_031755546.1
    XP_031755547.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016045.2 → NP_001016045.1  cell cycle checkpoint protein RAD1

      See identical proteins and their annotated locations for NP_001016045.1

      Status: PROVISIONAL

      Source sequence(s)
      CR762361
      UniProtKB/TrEMBL
      A9ULD8, F7E3L4
      Conserved Domains (1) summary
      pfam02144
      Location:16 → 256
      Rad1; Repair protein Rad1/Rec1/Rad17

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      199176003..199183765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031899687.1 → XP_031755547.1  cell cycle checkpoint protein RAD1 isoform X1

      UniProtKB/TrEMBL
      A9ULD8, F7E3L4
      Conserved Domains (1) summary
      pfam02144
      Location:16 → 256
      Rad1; Repair protein Rad1/Rec1/Rad17

    2. XM_031899685.1 → XP_031755545.1  cell cycle checkpoint protein RAD1 isoform X1

      UniProtKB/TrEMBL
      A9ULD8, F7E3L4
      Related
      ENSXETP00000001565.2, ENSXETT00000001565.4
      Conserved Domains (1) summary
      pfam02144
      Location:16 → 256
      Rad1; Repair protein Rad1/Rec1/Rad17

    3. XM_031899686.1 → XP_031755546.1  cell cycle checkpoint protein RAD1 isoform X1

      UniProtKB/TrEMBL
      A9ULD8, F7E3L4
      Conserved Domains (1) summary
      pfam02144
      Location:16 → 256
      Rad1; Repair protein Rad1/Rec1/Rad17
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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