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    blnk B cell linker [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548350, updated on 5-Mar-2024

    Summary

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    Official Symbol
    blnkprovided by Xenbase
    Official Full Name
    B cell linkerprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-946366
    See related
    Ensembl:ENSXETG00000012184
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (26060476..26148650, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (17751864..17804536, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene cyclin J Neighboring gene zinc finger protein 518A Neighboring gene DNA damage-regulated autophagy modulator protein 1 Neighboring gene DNA nucleotidylexotransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC147045

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in intracellular signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane receptor protein tyrosine kinase signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    B-cell linker protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078696.1 → NP_001072164.1  B-cell linker protein

      See identical proteins and their annotated locations for NP_001072164.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123982
      UniProtKB/TrEMBL
      Q08D21, Q5HZD8
      Related
      ENSXETP00000060295.3, ENSXETT00000064885.3
      Conserved Domains (1) summary
      cd09929
      Location:406 → 526
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      26060476..26148650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031905049.1 → XP_031760909.1  B-cell linker protein isoform X5

      UniProtKB/TrEMBL
      A0A8J1JSP3, Q5HZD8
      Related
      ENSXETP00000114466.1, ENSXETT00000121329.1
      Conserved Domains (2) summary
      cd09929
      Location:405 → 525
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03247
      Location:88 → 388
      PHA03247; large tegument protein UL36; Provisional

    2. XM_031905047.1 → XP_031760907.1  B-cell linker protein isoform X2

      UniProtKB/TrEMBL
      A0A8J1JSM4, B1WAX1
      Related
      ENSXETP00000113589.1, ENSXETT00000115397.1
      Conserved Domains (2) summary
      cd09929
      Location:424 → 544
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03247
      Location:107 → 407
      PHA03247; large tegument protein UL36; Provisional

    3. XM_031905050.1 → XP_031760910.1  B-cell linker protein isoform X7

      UniProtKB/TrEMBL
      A0A803KB02, Q5HZD8
      Related
      ENSXETP00000117592.1, ENSXETT00000120169.1
      Conserved Domains (2) summary
      cd09929
      Location:393 → 513
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03247
      Location:76 → 376
      PHA03247; large tegument protein UL36; Provisional

    4. XM_031905048.1 → XP_031760908.1  B-cell linker protein isoform X4

      UniProtKB/TrEMBL
      A0A8J1JSM1, B1WAX1
      Conserved Domains (2) summary
      cd09929
      Location:412 → 532
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03247
      Location:95 → 395
      PHA03247; large tegument protein UL36; Provisional

    5. XM_012966533.3 → XP_012821987.1  B-cell linker protein isoform X6

      UniProtKB/TrEMBL
      A0A8J0SSD0, Q5HZD8
      Conserved Domains (1) summary
      cd09929
      Location:405 → 525
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

    6. XM_012966532.3 → XP_012821986.1  B-cell linker protein isoform X3

      UniProtKB/TrEMBL
      A0A8J0STC9, B1WAX1
      Conserved Domains (1) summary
      cd09929
      Location:424 → 544
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

    7. XM_012966530.3 → XP_012821984.1  B-cell linker protein isoform X1

      UniProtKB/TrEMBL
      A0A803K457, B1WAX1
      Related
      ENSXETP00000115131.1, ENSXETT00000110465.1
      Conserved Domains (2) summary
      cd09929
      Location:425 → 545
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03247
      Location:108 → 408
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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