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    LOC542260 superoxide dismutase 2 [ Zea mays ]

    Gene ID: 542260, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542260
    Gene description
    superoxide dismutase 2
    Locus tag
    ZEAMMB73_Zm00001d022505
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    sod2; SODCC.1; GRMZM2G025992
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    Genomic context

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    See LOC542260 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (180879303..180882347, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (179058135..179061183)

    Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene L10-interacting MYB domain-containing protein-like Neighboring gene uncharacterized LOC100280106 Neighboring gene sodium/hydrogen exchanger 2-like Neighboring gene uncharacterized LOC100279763

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphorylation of ZmNAC84 at Ser-113 enhances the drought tolerance by directly modulating ZmSOD2 expression in maize. Han T, et al. Biochem Biophys Res Commun, 2021 Aug 27. PMID 34146906
    2. The superoxide dismutase-2 gene of maize. Cannon RE, et al. Isozymes Curr Top Biol Med Res, 1987. PMID 3597043
    3. Cloning of cDNA for maize superoxide dismutase 2 (SOD2). Cannon RE, et al. Proc Natl Acad Sci U S A, 1987 Jan. PMID 3467349, Free PMC Article
    4. Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Jia J, et al. Plant J, 2006 Dec. PMID 17076806
    5. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Phosphorylation of ZmNAC84 at Ser-113 enhances the drought tolerance by directly modulating ZmSOD2 expression in maize.
      Title: Phosphorylation of ZmNAC84 at Ser-113 enhances the drought tolerance by directly modulating ZmSOD2 expression in maize.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    superoxide dismutase [Cu-Zn] 2
    Names
    PCO107770
    PZA01278
    QBI25a07
    SodCc
    gnp_QBI25a07a
    gpm488a
    nPZA01278-2
    ncr(sod2)
    npi419-sod2
    npi419a(sod2)
    pco107770(579)
    NP_001105335.1
    XP_008651854.1
    XP_008651855.1
    XP_008651856.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111865.2 → NP_001105335.1  superoxide dismutase [Cu-Zn] 2

      See identical proteins and their annotated locations for NP_001105335.1

      Status: VALIDATED

      Source sequence(s)
      DQ244320
      UniProtKB/Swiss-Prot
      P11428
      UniProtKB/TrEMBL
      A0A804QG32, B6T056
      Conserved Domains (1) summary
      PLN02386
      Location:1 → 151
      PLN02386; superoxide dismutase [Cu-Zn]

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      180879303..180882347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008653634.3 → XP_008651856.1  superoxide dismutase [Cu-Zn] 2 isoform X3

      See identical proteins and their annotated locations for XP_008651856.1

      UniProtKB/Swiss-Prot
      P11428
      UniProtKB/TrEMBL
      A0A804QG32, B6T056
      Conserved Domains (1) summary
      PLN02386
      Location:1 → 151
      PLN02386; superoxide dismutase [Cu-Zn]

    2. XM_008653633.3 → XP_008651855.1  superoxide dismutase [Cu-Zn] 2 isoform X2

      UniProtKB/TrEMBL
      A0A1D6INM9, A0A804QG32
      Conserved Domains (1) summary
      PLN02386
      Location:15 → 165
      PLN02386; superoxide dismutase [Cu-Zn]

    3. XM_008653632.4 → XP_008651854.1  superoxide dismutase [Cu-Zn] 2 isoform X1

      See identical proteins and their annotated locations for XP_008651854.1

      UniProtKB/TrEMBL
      A0A3L6E3C0, C4J094
      Conserved Domains (1) summary
      PLN02386
      Location:60 → 210
      PLN02386; superoxide dismutase [Cu-Zn]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P11428.2 GenPept UniProtKB/Swiss-Prot:P11428

    Gene LinkOut

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