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    PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Bos taurus (cattle) ]

    Gene ID: 533642, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PLOD2provided by VGNC
    Official Full Name
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2provided by VGNC
    Primary source
    VGNC:VGNC:33040
    See related
    BGD:BT17401; Ensembl:ENSBTAG00000007331
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (122349984..122471157)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene beta-galactoside alpha-2,6-sialyltransferase 1 pseudogene Neighboring gene phospholipid scramblase 4 Neighboring gene U6 spliceosomal RNA Neighboring gene gamma-enolase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
    NP_001094619.1
    XP_005201855.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101149.1 → NP_001094619.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 precursor

      See identical proteins and their annotated locations for NP_001094619.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151390
      UniProtKB/TrEMBL
      A0A3Q1MG76, A7MB83
      Related
      ENSBTAP00000031895.4, ENSBTAT00000031949.5
      Conserved Domains (1) summary
      smart00702
      Location:597 → 760
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      122349984..122471157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201798.5 → XP_005201855.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LS34, A0A3Q1MG76
      Related
      ENSBTAP00000059826.1, ENSBTAT00000078721.2
      Conserved Domains (1) summary
      smart00702
      Location:576 → 739
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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