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    TSPAN15 tetraspanin 15 [ Bos taurus (cattle) ]

    Gene ID: 522371, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TSPAN15provided by VGNC
    Official Full Name
    tetraspanin 15provided by VGNC
    Primary source
    VGNC:VGNC:36430
    See related
    BGD:BT26890; Ensembl:ENSBTAG00000000224
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 28
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (25803117..25855705)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene hexokinase domain containing 1 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene hexokinase 1 Neighboring gene tachykinin receptor 2 Neighboring gene small ribosomal subunit protein uS2B-like Neighboring gene neurogenin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139416

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-15
    Names
    tspan-15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075829.1 → NP_001069297.1  tetraspanin-15

      See identical proteins and their annotated locations for NP_001069297.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116110
      UniProtKB/Swiss-Prot
      Q1JQA4
      Related
      ENSBTAP00000031290.3, ENSBTAT00000031335.4
      Conserved Domains (2) summary
      cd03158
      Location:114 → 231
      penumbra_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:19 → 256
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25803117..25855705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010820586.4 → XP_010818888.1  tetraspanin-15 isoform X2

      See identical proteins and their annotated locations for XP_010818888.1

      Related
      ENSBTAP00000097195.1, ENSBTAT00000133228.1
      Conserved Domains (2) summary
      cd03158
      Location:98 → 254
      penumbra_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:17 → 279
      Tetraspannin; Tetraspanin family

    2. XM_010820587.4 → XP_010818889.1  tetraspanin-15 isoform X2

      See identical proteins and their annotated locations for XP_010818889.1

      Conserved Domains (2) summary
      cd03158
      Location:98 → 254
      penumbra_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:17 → 279
      Tetraspannin; Tetraspanin family

    3. XM_010820585.4 → XP_010818887.1  tetraspanin-15 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6J2
      Related
      ENSBTAP00000063927.1, ENSBTAT00000066626.2
      Conserved Domains (2) summary
      cd03158
      Location:114 → 270
      penumbra_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:19 → 295
      Tetraspannin; Tetraspanin family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1JQA4.1 GenPept UniProtKB/Swiss-Prot:Q1JQA4

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