U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NPNT nephronectin [ Bos taurus (cattle) ]

    Gene ID: 513362, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NPNTprovided by VGNC
    Official Full Name
    nephronectinprovided by VGNC
    Primary source
    VGNC:VGNC:32209
    See related
    BGD:BT19422; Ensembl:ENSBTAG00000006686
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (19173914..19254234, complement)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene small Cajal body-specific RNA 18 Neighboring gene glutathione S-transferase C-terminal domain containing

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nephronectin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      19173914..19254234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993514.2 → XP_024849282.1  nephronectin isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MK20
      Related
      ENSBTAP00000094977.1, ENSBTAT00000101677.1
      Conserved Domains (5) summary
      cd06263
      Location:420 → 559
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam07645
      Location:169 → 201
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:150 → 172
      cEGF; Complement Clr-like EGF-like
      pfam12947
      Location:218 → 253
      EGF_3; EGF domain
      cl00057
      Location:81 → 125
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_059887713.1 → XP_059743696.1  nephronectin isoform X6

      Related
      ENSBTAP00000098514.1, ENSBTAT00000125784.1

    3. XM_024993512.2 → XP_024849280.1  nephronectin isoform X2

      UniProtKB/TrEMBL
      A0A3Q1N3A9
      Conserved Domains (5) summary
      cd06263
      Location:451 → 590
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      cd00054
      Location:120 → 152
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam07645
      Location:200 → 232
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:181 → 203
      cEGF; Complement Clr-like EGF-like
      pfam12947
      Location:249 → 284
      EGF_3; EGF domain

    4. XM_024993513.2 → XP_024849281.1  nephronectin isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MK20
      Related
      ENSBTAP00000082485.1, ENSBTAT00000103689.1
      Conserved Domains (5) summary
      cd06263
      Location:437 → 576
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam07645
      Location:186 → 218
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:167 → 189
      cEGF; Complement Clr-like EGF-like
      pfam12947
      Location:235 → 270
      EGF_3; EGF domain
      cl00057
      Location:98 → 142
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    5. XM_024993516.2 → XP_024849284.1  nephronectin isoform X5

      UniProtKB/TrEMBL
      A0A3Q1MMM4
      Related
      ENSBTAP00000089076.1, ENSBTAT00000112952.1
      Conserved Domains (5) summary
      cd00054
      Location:137 → 169
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam07645
      Location:217 → 249
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:198 → 220
      cEGF; Complement Clr-like EGF-like
      pfam12947
      Location:266 → 301
      EGF_3; EGF domain
      cl27660
      Location:468 → 495
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...

    6. XM_024993511.2 → XP_024849279.1  nephronectin isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMM4
      Conserved Domains (5) summary
      cd06263
      Location:468 → 607
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      cd00054
      Location:137 → 169
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam07645
      Location:217 → 249
      EGF_CA; Calcium-binding EGF domain
      pfam12662
      Location:198 → 220
      cEGF; Complement Clr-like EGF-like
      pfam12947
      Location:266 → 301
      EGF_3; EGF domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous