U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PRPF18 pre-mRNA processing factor 18 [ Bos taurus (cattle) ]

    Gene ID: 507639, updated on 5-Mar-2024

    Summary

    Gene symbol
    PRPF18
    Gene description
    pre-mRNA processing factor 18
    See related
    BGD:BT30450; Ensembl:ENSBTAG00000017244
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (28284969..28341091)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene BEN domain containing 7 Neighboring gene transfer RNA aspartic acid (anticodon AUC) Neighboring gene uncharacterized LOC132346889 Neighboring gene uncharacterized LOC104973746 Neighboring gene FERM domain containing 4A

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Pathways from PubChem

    General protein information

    Preferred Names
    pre-mRNA-splicing factor 18
    Names
    PRP18 homolog
    PRP18 pre-mRNA processing factor 18 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075323.1NP_001068791.1  pre-mRNA-splicing factor 18

      See identical proteins and their annotated locations for NP_001068791.1

      Status: PROVISIONAL

      Source sequence(s)
      BC113323
      UniProtKB/Swiss-Prot
      Q2HJ41
      Related
      ENSBTAP00000022912.3, ENSBTAT00000022912.5
      Conserved Domains (2) summary
      smart00500
      Location:79122
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      pfam02840
      Location:191327
      Prp18; Prp18 domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      28284969..28341091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214176.5XP_005214233.1  pre-mRNA-splicing factor 18 isoform X1

      See identical proteins and their annotated locations for XP_005214233.1

      UniProtKB/TrEMBL
      A0A3Q1LVR3
      Related
      ENSBTAP00000061262.1, ENSBTAT00000077640.2
      Conserved Domains (2) summary
      smart00500
      Location:88131
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      pfam02840
      Location:200336
      Prp18; Prp18 domain