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    An02g06890 uncharacterized protein [ Aspergillus niger ]

    Gene ID: 4979178, updated on 3-Apr-2024

    Summary

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    Gene symbol
    An02g06890
    Gene description
    uncharacterized protein
    Locus tag
    An02g06890
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aspergillus niger
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
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    Genomic context

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    Location:
    chromosome: IV, map: unlocalized, clone: An02
    Exon count:
    1

    NT_166519.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NT_166519.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, DNA ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via alternative nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase III-XRCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_001399823.1
    • Catalytic activity: ATP + deoxyribonucleotide(N) + deoxyribonucleotide(M) <=> AMP + diphosphate + deoxyribonucleotide(N+M);
      Function: Catalyses the formation of a phosphodiester at the site of a single strand break in duplex DNA.;
      Remark: RNA can also act as substrate to some extent.;
      Title: strong similarity to DNA ligase cdc17p -Schizosaccharomyces pombe

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_166519.1 Reference assembly

      Range
      1629219..1631723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001399786.1 → XP_001399823.1  uncharacterized protein An02g06890 [Aspergillus niger]

      See identical proteins and their annotated locations for XP_001399823.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A319AS26, A0A370C3Y0, A0A3F3RIB2, A0A9W6A662, A5AA81, G3Y3H7
      Conserved Domains (1) summary
      PLN03113
      Location:31 → 826
      PLN03113; DNA ligase 1; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases