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    arl5b.S ADP ribosylation factor like GTPase 5B S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 496255, updated on 11-Apr-2024

    Summary

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    Official Symbol
    arl5b.S
    Official Full Name
    ADP ribosylation factor like GTPase 5B S homeolog
    Primary source
    Xenbase:XB-GENE-996909
    Locus tag
    XELAEV_18032921mg
    See related
    EnsemblRapid:ENSXLAG00005029065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    arl8; arl5a; arl5b; arl5b.L
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: 6S
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (21000885..21020781, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (20649928..20669910, complement)

    Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene plexin domain containing 2 S homeolog Neighboring gene uncharacterized LOC121395000 Neighboring gene uncharacterized LOC121394999 Neighboring gene calcium channel, voltage-dependent, beta 2 subunit S homeolog Neighboring gene solute carrier family 39 (zinc transporter), member 12 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein localization to Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ADP ribosylation factor like GTPase 5B S homeolog
    Names
    ADP ribosylation factor like GTPase 5B L homeolog
    ADP-ribosylation factor-like 5A
    ADP-ribosylation factor-like 5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095436.1 → NP_001088905.1  ADP ribosylation factor like GTPase 5B S homeolog

      See identical proteins and their annotated locations for NP_001088905.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088791
      UniProtKB/TrEMBL
      A0A974CIF4, Q5M783
      Related
      ENSXLAP00005086698.1, ENSXLAT00005088360.1
      Conserved Domains (2) summary
      cd04153
      Location:3 → 175
      Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases
      smart00178
      Location:8 → 173
      SAR; Sar1p-like members of the Ras-family of small GTPases

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      21000885..21020781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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