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    CDH16 cadherin 16 [ Canis lupus familiaris (dog) ]

    Gene ID: 489770, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CDH16provided by VGNC
    Official Full Name
    cadherin 16provided by VGNC
    Primary source
    VGNC:VGNC:39024
    See related
    Ensembl:ENSCAFG00845010781
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CDH16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (82835051..82854428)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (82387135..82406493)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (82984014..83003379)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (82658232..82677589)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (82345049..82364362)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene cytosolic iron-sulfur assembly component 2B Neighboring gene RRAD, Ras related glycolysis inhibitor and calcium channel regulator Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 2 Neighboring gene carbonic anhydrase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      82835051..82854428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038667444.1 → XP_038523372.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:264 → 334
      CA; Cadherin repeats

    2. XM_038667446.1 → XP_038523374.1  cadherin-16 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:339 → 441
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    3. XM_038667447.1 → XP_038523375.1  cadherin-16 isoform X3

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    4. XM_038667448.1 → XP_038523376.1  cadherin-16 isoform X4

      UniProtKB/TrEMBL
      A0A8C0KZW1, A0A8I3NGP5
      Related
      ENSCAFP00845015063.1, ENSCAFT00845019275.1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    5. XM_038667445.1 → XP_038523373.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:264 → 334
      CA; Cadherin repeats

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      82658232..82677589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038477517.1 → XP_038333445.1  cadherin-16 isoform X1

    2. XM_038477519.1 → XP_038333447.1  cadherin-16 isoform X2

    3. XM_038477520.1 → XP_038333448.1  cadherin-16 isoform X3

    4. XM_038477521.1 → XP_038333449.1  cadherin-16 isoform X4

    5. XM_038477518.1 → XP_038333446.1  cadherin-16 isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      82345049..82364362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038602840.1 → XP_038458768.1  cadherin-16 isoform X1

    2. XM_038602842.1 → XP_038458770.1  cadherin-16 isoform X2

    3. XM_038602843.1 → XP_038458771.1  cadherin-16 isoform X3

    4. XM_038602844.1 → XP_038458772.1  cadherin-16 isoform X4

    5. XM_038602841.1 → XP_038458769.1  cadherin-16 isoform X1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      82984014..83003379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038538738.1 → XP_038394666.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1

    2. XM_038538741.1 → XP_038394669.1  cadherin-16 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KZW1

    3. XM_038538742.1 → XP_038394670.1  cadherin-16 isoform X3

      UniProtKB/TrEMBL
      A0A8C0KZW1

    4. XM_038538743.1 → XP_038394671.1  cadherin-16 isoform X4

      UniProtKB/TrEMBL
      A0A8C0KZW1

    5. XM_038538740.1 → XP_038394668.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      82387135..82406493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022419391.2 → XP_022275099.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:264 → 334
      CA; Cadherin repeats

    2. XM_022419393.2 → XP_022275101.1  cadherin-16 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:339 → 441
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    3. XM_005620864.4 → XP_005620921.1  cadherin-16 isoform X3

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    4. XM_014114120.3 → XP_013969595.1  cadherin-16 isoform X4

      UniProtKB/TrEMBL
      A0A8C0KZW1, A0A8C0RH91, A0A8P0NLV3
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:56 → 124
      CA; Cadherin repeats

    5. XM_022419392.2 → XP_022275100.1  cadherin-16 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KZW1
      Conserved Domains (2) summary
      cd11304
      Location:343 → 445
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:264 → 334
      CA; Cadherin repeats
    Nucleotide Protein
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