U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SEMA3B semaphorin 3B [ Canis lupus familiaris (dog) ]

    Gene ID: 484762, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SEMA3Bprovided by VGNC
    Official Full Name
    semaphorin 3Bprovided by VGNC
    Primary source
    VGNC:VGNC:45988
    See related
    Ensembl:ENSCAFG00845022465
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 20
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (39409187..39423343, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (38974188..38988336, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (39460589..39474738, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (38777009..38791156, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (39180520..39194640, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091327 Neighboring gene hyaluronidase 1 Neighboring gene hyaluronidase 3 Neighboring gene N-alpha-acetyltransferase 80, NatH catalytic subunit Neighboring gene interferon related developmental regulator 2 Neighboring gene leucine rich single-pass membrane protein 2 Neighboring gene uncharacterized LOC119864689 Neighboring gene G protein subunit alpha i2 Neighboring gene uncharacterized LOC119864586

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Density of Gr1-positive myeloid precursor cells, p-STAT3 expression and gene expression pattern in canine mammary cancer metastasis. Król M, et al. Vet Res Commun, 2011 Oct. PMID 21713436, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    semaphorin-3B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      39409187..39423343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038427694.1 → XP_038283622.1  semaphorin-3B

      UniProtKB/TrEMBL
      A0A8I3PF61
      Related
      ENSCAFP00845031096.1, ENSCAFT00845039696.1
      Conserved Domains (4) summary
      smart00423
      Location:515 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:574 → 580
      Ig; Ig strand A [structural motif]
      cl11960
      Location:574 → 665
      Ig; Immunoglobulin domain
      cl15693
      Location:47 → 516
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RNA

    1. XR_005297946.1 RNA Sequence

    2. XR_005297947.1 RNA Sequence

    3. XR_005297945.1 RNA Sequence

    4. XR_005297944.1 RNA Sequence

    5. XR_005297943.1 RNA Sequence

    6. XR_005297948.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      38777009..38791156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038503380.1 → XP_038359308.1  semaphorin-3B

      Conserved Domains (4) summary
      smart00423
      Location:515 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:574 → 580
      Ig; Ig strand A [structural motif]
      cl11960
      Location:574 → 665
      Ig; Immunoglobulin domain
      cl15693
      Location:47 → 516
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RNA

    1. XR_005341133.1 RNA Sequence

    2. XR_005341134.1 RNA Sequence

    3. XR_005341132.1 RNA Sequence

    4. XR_005341131.1 RNA Sequence

    5. XR_005341130.1 RNA Sequence

    6. XR_005341135.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      39180520..39194640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038630531.1 → XP_038486459.1  semaphorin-3B

      Conserved Domains (4) summary
      smart00423
      Location:515 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:574 → 580
      Ig; Ig strand A [structural motif]
      cl11960
      Location:574 → 665
      Ig; Immunoglobulin domain
      cl15693
      Location:47 → 516
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RNA

    1. XR_005408933.1 RNA Sequence

    2. XR_005408934.1 RNA Sequence

    3. XR_005408932.1 RNA Sequence

    4. XR_005408931.1 RNA Sequence

    5. XR_005408935.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      39460589..39474738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038566381.1 → XP_038422309.1  semaphorin-3B

      UniProtKB/TrEMBL
      A0A8C0N551, A0A8P0TJD1
      Conserved Domains (4) summary
      smart00423
      Location:515 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:574 → 580
      Ig; Ig strand A [structural motif]
      cl11960
      Location:574 → 665
      Ig; Immunoglobulin domain
      cl15693
      Location:47 → 516
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RNA

    1. XR_005374924.1 RNA Sequence

    2. XR_005374926.1 RNA Sequence

    3. XR_005374923.1 RNA Sequence

    4. XR_005374922.1 RNA Sequence

    5. XR_005374927.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      38974188..38988336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038454906.1 → XP_038310834.1  semaphorin-3B

      UniProtKB/TrEMBL
      A0A8C0N551, A0A8P0TJD1
      Conserved Domains (4) summary
      smart00423
      Location:515 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:574 → 580
      Ig; Ig strand A [structural motif]
      cl11960
      Location:574 → 665
      Ig; Immunoglobulin domain
      cl15693
      Location:47 → 516
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RNA

    1. XR_005312350.1 RNA Sequence

    2. XR_005312351.1 RNA Sequence

    3. XR_005312349.1 RNA Sequence

    4. XR_005312348.1 RNA Sequence

    5. XR_005312347.1 RNA Sequence

    6. XR_005312352.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.