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    CALCOCO2 calcium binding and coiled-coil domain 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 480545, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CALCOCO2provided by VGNC
    Official Full Name
    calcium binding and coiled-coil domain 2provided by VGNC
    Primary source
    VGNC:VGNC:38663
    See related
    Ensembl:ENSCAFG00845010119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (25845530..25873110)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (24514436..24541796)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (25002881..25030259)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (24613433..24640979)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24873840..24901366)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene homeobox B13 Neighboring gene tubulin tyrosine ligase like 6 Neighboring gene uncharacterized LOC111097370 Neighboring gene U2 spliceosomal RNA Neighboring gene ATP synthase membrane subunit c locus 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of autophagosome maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xenophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding and coiled-coil domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      25845530..25873110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676770.1 → XP_038532698.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LWK6, A0A8C0R6H7, A0A8I3NGB8, A0A8P0PH46
      Related
      ENSCAFP00845013966.1, ENSCAFT00845017930.1
      Conserved Domains (3) summary
      COG1196
      Location:139 → 349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain
      cd21968
      Location:423 → 449
      Zn-C2H2_CALCOCO2; C2H2-type zinc binding domain found in calcium-binding and coiled-coil domain-containing protein 2 (CALCOCO2) and similar proteins

    2. XM_038676771.1 → XP_038532699.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X2

      Conserved Domains (2) summary
      COG1196
      Location:139 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain

    RNA

    1. XR_005432218.1 RNA Sequence

    2. XR_005432219.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      24613433..24640979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485820.1 → XP_038341748.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:139 → 349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain
      cd21968
      Location:423 → 449
      Zn-C2H2_CALCOCO2; C2H2-type zinc binding domain found in calcium-binding and coiled-coil domain-containing protein 2 (CALCOCO2) and similar proteins

    2. XM_038485821.1 → XP_038341749.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X3

      Conserved Domains (2) summary
      COG1196
      Location:139 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain

    RNA

    1. XR_005330740.1 RNA Sequence

    2. XR_005330741.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      24873840..24901366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611572.1 → XP_038467500.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:139 → 349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain
      cd21968
      Location:423 → 449
      Zn-C2H2_CALCOCO2; C2H2-type zinc binding domain found in calcium-binding and coiled-coil domain-containing protein 2 (CALCOCO2) and similar proteins

    2. XM_038611573.1 → XP_038467501.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X4

      Conserved Domains (2) summary
      COG1196
      Location:139 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain

    RNA

    1. XR_005398891.1 RNA Sequence

    2. XR_005398892.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      25002881..25030259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547598.1 → XP_038403526.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LWK6, A0A8C0R6H7, A0A8I3NGB8, A0A8P0PH46
      Conserved Domains (3) summary
      COG1196
      Location:139 → 349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain
      cd21968
      Location:423 → 449
      Zn-C2H2_CALCOCO2; C2H2-type zinc binding domain found in calcium-binding and coiled-coil domain-containing protein 2 (CALCOCO2) and similar proteins

    2. XM_038547599.1 → XP_038403527.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X5

      Conserved Domains (2) summary
      COG1196
      Location:139 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain

    RNA

    1. XR_005364465.1 RNA Sequence

    2. XR_005364466.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      24514436..24541796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_537667.6 → XP_537667.2  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LWK6, A0A8C0R6H7, A0A8I3NGB8, A0A8P0PH46
      Conserved Domains (3) summary
      COG1196
      Location:139 → 349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain
      cd21968
      Location:423 → 449
      Zn-C2H2_CALCOCO2; C2H2-type zinc binding domain found in calcium-binding and coiled-coil domain-containing protein 2 (CALCOCO2) and similar proteins

    2. XM_038605413.1 → XP_038461341.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X6

      Conserved Domains (2) summary
      COG1196
      Location:139 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17751
      Location:23 → 125
      SKICH; SKICH domain

    RNA

    1. XR_002629942.2 RNA Sequence

    2. XR_002629943.2 RNA Sequence

    Nucleotide Protein
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