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    GTF2F1 general transcription factor IIF subunit 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 476731, updated on 5-Mar-2024

    Summary

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    Official Symbol
    GTF2F1provided by VGNC
    Official Full Name
    general transcription factor IIF subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:41546
    See related
    Ensembl:ENSCAFG00845011192
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (54425381..54434910)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (53518020..53527557)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (54169704..54179458)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (53491833..53501378)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (53940180..53949728)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 41 Neighboring gene uncharacterized LOC106560123 Neighboring gene KH-type splicing regulatory protein Neighboring gene adenylate kinase isoenzyme 1 Neighboring gene alkB homolog 7 Neighboring gene persephin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TFIIF-class transcription factor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIIF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor IIF subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      54425381..54434910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038428883.1 → XP_038284811.1  general transcription factor IIF subunit 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    2. XM_038428881.1 → XP_038284809.1  general transcription factor IIF subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 518
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    3. XM_038428884.1 → XP_038284812.1  general transcription factor IIF subunit 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:1 → 490
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    4. XM_038428882.1 → XP_038284810.1  general transcription factor IIF subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L4C9, A0A8C0P4U9, A0A8I3NTV5, A0A8P0NJR4
      Related
      ENSCAFP00845015560.1, ENSCAFT00845019868.1
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      53491833..53501378
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038504510.1 → XP_038360438.1  general transcription factor IIF subunit 1 isoform X3

      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    2. XM_038504508.1 → XP_038360436.1  general transcription factor IIF subunit 1 isoform X1

      Conserved Domains (1) summary
      pfam05793
      Location:2 → 518
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    3. XM_038504511.1 → XP_038360439.1  general transcription factor IIF subunit 1 isoform X4

      Conserved Domains (1) summary
      pfam05793
      Location:1 → 490
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    4. XM_038504509.1 → XP_038360437.1  general transcription factor IIF subunit 1 isoform X2

      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      53940180..53949728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038631709.1 → XP_038487637.1  general transcription factor IIF subunit 1 isoform X3

    2. XM_038631707.1 → XP_038487635.1  general transcription factor IIF subunit 1 isoform X1

    3. XM_038631710.1 → XP_038487638.1  general transcription factor IIF subunit 1 isoform X4

    4. XM_038631708.1 → XP_038487636.1  general transcription factor IIF subunit 1 isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      54169704..54179458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038567561.1 → XP_038423489.1  general transcription factor IIF subunit 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    2. XM_038567559.1 → XP_038423487.1  general transcription factor IIF subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 518
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    3. XM_038567562.1 → XP_038423490.1  general transcription factor IIF subunit 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:1 → 490
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    4. XM_038567560.1 → XP_038423488.1  general transcription factor IIF subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L4C9, A0A8C0P4U9, A0A8I3NTV5, A0A8P0NJR4
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      53518020..53527557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038455585.1 → XP_038311513.1  general transcription factor IIF subunit 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    2. XM_038455583.1 → XP_038311511.1  general transcription factor IIF subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 518
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    3. XM_038455586.1 → XP_038311514.1  general transcription factor IIF subunit 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0P4U9
      Conserved Domains (1) summary
      pfam05793
      Location:1 → 490
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    4. XM_038455584.1 → XP_038311512.1  general transcription factor IIF subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L4C9, A0A8C0P4U9, A0A8I3NTV5, A0A8P0NJR4
      Conserved Domains (1) summary
      pfam05793
      Location:2 → 517
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    Nucleotide Protein
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