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    ATG12 autophagy related 12 [ Canis lupus familiaris (dog) ]

    Gene ID: 474636, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ATG12provided by VGNC
    Official Full Name
    autophagy related 12provided by VGNC
    Primary source
    VGNC:VGNC:38216
    See related
    Ensembl:ENSCAFG00845005357
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (5522868..5534845, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (5681691..5693659, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (5801442..5813410, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (5478061..5490016, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (5549224..5561188, complement)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097989 Neighboring gene cysteine dioxygenase type 1 Neighboring gene non-histone chromosomal protein HMG-17-like Neighboring gene adaptor related protein complex 3 subunit sigma 1 Neighboring gene uncharacterized LOC119874020

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like protein ATG12
    Names
    ATG12 autophagy related 12 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      5522868..5534845 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038681206.1 → XP_038537134.1  ubiquitin-like protein ATG12 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QV24, A0A8C0SEB7, A0A8I3NBC3
      Related
      ENSCAFP00845007444.1, ENSCAFT00845009522.1
      Conserved Domains (1) summary
      cd01612
      Location:54 → 139
      Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

    2. XM_038681207.1 → XP_038537135.1  ubiquitin-like protein ATG12 isoform X2

    RNA

    1. XR_005434334.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      5478061..5490016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038489807.1 → XP_038345735.1  ubiquitin-like protein ATG12 isoform X1

      Conserved Domains (1) summary
      cd01612
      Location:54 → 139
      Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

    2. XM_038489808.1 → XP_038345736.1  ubiquitin-like protein ATG12 isoform X2

    RNA

    1. XR_005332892.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      5549224..5561188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038615739.1 → XP_038471667.1  ubiquitin-like protein ATG12 isoform X1

      Conserved Domains (1) summary
      cd01612
      Location:54 → 139
      Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

    2. XM_038615740.1 → XP_038471668.1  ubiquitin-like protein ATG12 isoform X2

    RNA

    1. XR_005400960.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      5801442..5813410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038551851.1 → XP_038407779.1  ubiquitin-like protein ATG12 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QV24, A0A8C0SEB7, A0A8I3NBC3
      Conserved Domains (1) summary
      cd01612
      Location:54 → 139
      Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

    2. XM_038551852.1 → XP_038407780.1  ubiquitin-like protein ATG12 isoform X2

    RNA

    1. XR_005366528.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      5681691..5693659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_531866.7 → XP_531866.2  ubiquitin-like protein ATG12 isoform X1

      See identical proteins and their annotated locations for XP_531866.2

      UniProtKB/TrEMBL
      A0A8C0QV24, A0A8C0SEB7, A0A8I3NBC3
      Conserved Domains (1) summary
      cd01612
      Location:54 → 139
      Ubl_ATG12; ubiquitin-like (Ubl) domain found in autophagy-related protein 12 (ATG12)

    2. XM_022425133.2 → XP_022280841.1  ubiquitin-like protein ATG12 isoform X2

    RNA

    1. XR_001317238.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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