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    HOMER1 homer scaffold protein 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 471504, updated on 29-Mar-2024

    Summary

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    Official Symbol
    HOMER1provided by VGNC
    Official Full Name
    homer scaffold protein 1provided by VGNC
    Primary source
    VGNC:VGNC:4038
    Locus tag
    CK820_G0009365
    See related
    Ensembl:ENSPTRG00000017026
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (36532215..36674714)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (36952820..37091568)

    Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134810010 Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene large ribosomal subunit protein eL29-like Neighboring gene junction mediating and regulatory protein, p53 cofactor Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene small nucleolar RNA SNORA18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled glutamate receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled glutamate receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of store-operated calcium entry IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homer protein homolog 1
    Names
    homer homolog 1
    homer scaffolding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      36532215..36674714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054684276.2 → XP_054540251.1  homer protein homolog 1 isoform X5

    2. XM_016953092.4 → XP_016808581.2  homer protein homolog 1 isoform X3

      UniProtKB/TrEMBL
      H2QR55
      Conserved Domains (2) summary
      cd01206
      Location:3 → 116
      EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain
      cl25732
      Location:162 → 357
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_016953093.4 → XP_016808582.2  homer protein homolog 1 isoform X4

      UniProtKB/TrEMBL
      A0A2J8NN42, A0A803KKU6, H2QR55, K7BY67
      Conserved Domains (2) summary
      cd01206
      Location:3 → 111
      EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain
      cl25732
      Location:157 → 352
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_054684274.2 → XP_054540249.1  homer protein homolog 1 isoform X1

    5. XM_054684275.2 → XP_054540250.1  homer protein homolog 1 isoform X2

    6. XM_024356591.3 → XP_024212359.1  homer protein homolog 1 isoform X5

      Conserved Domains (2) summary
      cl17171
      Location:1 → 52
      PH-like; Pleckstrin homology-like domain
      cl25732
      Location:98 → 293
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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