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    CHD5 chromodomain helicase DNA binding protein 5 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 469781, updated on 3-Apr-2024

    Summary

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    Official Symbol
    CHD5provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 5provided by VGNC
    Primary source
    VGNC:VGNC:503
    Locus tag
    CK820_G0035123
    See related
    Ensembl:ENSPTRG00000000075
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (225824095..225903797)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (5395504..5475029, complement)

    Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112208940 Neighboring gene ring finger protein 207 Neighboring gene ribosomal protein L22 Neighboring gene uncharacterized LOC134807597 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene nephrocystin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 5
    Names
    Coronary heart disease, susceptibility to, 5
    XP_016808520.1
    XP_054518042.1
    XP_054518044.1
    XP_054518047.1
    XP_063643086.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      225824095..225903797
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063787016.1 → XP_063643086.1  chromodomain-helicase-DNA-binding protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SB75, A0A2J8KY79, A0A6D2WQN2

    2. XM_016953031.4 → XP_016808520.1  chromodomain-helicase-DNA-binding protein 5 isoform X2

      UniProtKB/TrEMBL
      H2PXW2

    3. XM_054662069.1 → XP_054518044.1  chromodomain-helicase-DNA-binding protein 5 isoform X4

    4. XM_054662067.2 → XP_054518042.1  chromodomain-helicase-DNA-binding protein 5 isoform X3

    5. XM_054662072.2 → XP_054518047.1  chromodomain-helicase-DNA-binding protein 5 isoform X5

    RNA

    1. XR_010148419.1 RNA Sequence

    2. XR_010148421.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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